Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs2698093 chr12:119255035 A/G 1.93E-11 527 1.13 37.77 39.85 KM Plot
KIRC rs2708779 chr19:54036754 G/A 3.87E-5 524 39.08 44.3 19.27 KM Plot
KIRC rs2742962 chr1:23813592 G/C 2.74E-8 520 3.3 33.52 42.2 KM Plot
KIRC rs2742964 chr1:23825889 C/T 1.39E-5 512 5 33.97 43.02 KM Plot
KIRC rs2795907 chr10:70328301 A/C 1.57E-6 527 3.67 37.53 40 KM Plot
KIRC rs2811975 chr1:23801081 A/T 3.59E-8 518 3.3 34.47 41.73 KM Plot
KIRC rs2817416 chr6:50809777 T/C 4.38E-6 521 41 40 15.3 KM Plot
KIRC rs28360595 chr6:26030044 A/G 2.94E-9 525 40.8 36.63 3.37 KM Plot
KIRC rs28360628 chr6:2414792 A/G 7.09E-8 526 40 39.87 12.25 KM Plot
KIRC rs28377010 chr4:16204257 A/G 3.36E-6 525 38.95 46.8 8.22 KM Plot
KIRC rs2839294 chr21:47917664 T/C 1.72E-5 523 38.97 45.77 6.87 KM Plot
KIRC rs2844517 chr6:31375117 T/A 8.76E-6 517 38.93 46.37 1.88 KM Plot
KIRC rs2844520 chr6:31407758 G/T 8.27E-6 524 38.83 45.93 1.88 KM Plot
KIRC rs2845839 chr11:125306283 G/A 6.11E-15 517 42.33 36.3 1.4 KM Plot
KIRC rs2845847 chr11:125344535 C/T 6.72E-6 516 40 37.67 1.43 KM Plot